Ended up choosing to go with a more step by step method for merging count matrices…
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DESeq2 Differential Expression Analysis Pipeline
Basic code to build off of…
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CEABiGR Kallisto Run for lncRNA Count Matrix
Completed
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LncPipe Workflow
What’s working for me here is the install and configuration instructions. I inspected Raven to see if nextflow is already installed and it was not to my knowledge. I’m just going to start the lncPipe from the very beginning at installation.
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2023 February Daily Bits
Current To-do List
Make posts about DEA pipeline and non-coding RNA function prediction tools
Confirm normalizing primer for mussel work
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