TL;DR - Plans and new developments for additional Olympia oyster genetics work. Opportunity to work with lcWGS data from WDFW using machine learning to address the question of local adaptation. Moving forward with NW CASC Fellowship work despite uncertainty over funding.
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Summer Quarter 2025 Dailies
June 23
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07.07.2025 Converting genind to genpop file for updated NeEstimator run
TL;DR - Had to re-run Oly RAD-seq data for effective population size after outliers were filtered out. Had to convert from genind to GENEPOP, which was much more annoying than I expected.
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07.01.2025 Adaptation of Pearson's correlation code for E5 lncRNA
TL;DR - Adapted the PCC code Jill and Kathleen have been using. Should work on raven for all mRNA-lncRNA correlations. Ptuh used in example.
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06.26.2025 Review of first two chapters and key to-dos
TL;DR - I went through the current status of my first two chapters to get a status report of to-dos to complete rough drafts during the writing portion of today’s hack-a-thon.
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