Goals for Week 02 of Winter 2024…

CEABiGR oyster lncRNA

  • DESeq2 runs for mRNA
  • Methods section of manuscript
  • Lab notebook update post about WGCNA run for females and generated figures
  • Run WGCNA for males lncRNA
    • Summary & figures: # of modules, cluster dendrogram, module significance, interesting modules to investigate further ; lab notebook post
  • Touch base with Ariana about typical WGCNA settings for lncRNAs and mRNAs (pretty sure I know where to start with this, but will ping her to get her thoughts)

e5 coral 3 species lncRNA

  • Final results of hits between species
  • Pull transcript IDs hits between species
  • Pull hits for hits between species and reference RNAcentral ID to get actual annotation

Olympia oyster pop gen

  • Meet with Mac to discuss project and solidify goals for the project
  • Get pre-existing repo and any coding that has already been done
  • Create repo
  • Get data on Raven