Ran DESeq2 for females only, males only, and combined not accounting for sex. Volcano plots, PCAs, and heatmaps of the top 30 most differentially expressed included for each.
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E5 3 Species 05 - P. meandrina and P. evermanni lncRNA Discovery
lncRNA discovery completed for P. meandrina and P. evermanni
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E5 3 Species 04 - Pocillopora Mapping Comparison
Ran HISAT2 alignments for Pocillopora E5 data using P. effusa and P. verrucosa references. P. effusa had the worst alignment. P. verrucosa and P. meandrina are very similar in alignment rates, so we will go with P. meandrina since it has a better annotation.
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E5 3 Species 03 - Pocillopora Mapping
I ran HISAT2 to get alignments for the E5 Pocillopora data using the P. meandrina reference we had decided on here in the wiki. Overall alignment rates look kind of low. Are we sure about using this?
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E5 3 Species 02 - Porites Mapping
I ran HISAT2 to get alignments for the E5 Porites data using P. lobata and P. evermanni references from here. Looks like the P. evermanni reference wins out with higher overall alignments.
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