I ran HISAT2 to get alignments for the E5 Pocillopora data using the P. meandrina reference we had decided on here in the wiki. Overall alignment rates look kind of low. Are we sure about using this?
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E5 3 Species 02 - Porites Mapping
I ran HISAT2 to get alignments for the E5 Porites data using P. lobata and P. evermanni references from here. Looks like the P. evermanni reference wins out with higher overall alignments.
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E5 3 Species 01 - A pulchra lncRNA Discovery
Successfully ran lncRNA discovery workflow on the Acropora pulchra samples.
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Bypass and Progress Planning
Overview
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