Lab Notebook

lncRNA discovery completed for P. meandrina and P. evermanni [Read More]

Ran HISAT2 alignments for Pocillopora E5 data using P. effusa and P. verrucosa references. P. effusa had the worst alignment. P. verrucosa and P. meandrina are very similar in alignment rates, so we will go with P. meandrina since it has a better annotation. [Read More]

I ran HISAT2 to get alignments for the E5 Pocillopora data using the P. meandrina reference we had decided on here in the wiki. Overall alignment rates look kind of low. Are we sure about using this? [Read More]

I ran HISAT2 to get alignments for the E5 Porites data using P. lobata and P. evermanni references from here. Looks like the P. evermanni reference wins out with higher overall alignments. [Read More]

Successfully ran lncRNA discovery workflow on the Acropora pulchra samples. [Read More]