Zach Bengtsson
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lncRNA in Express Compare Data

Posted on June 7, 2022

Identifying long non-coding RNA in RNA-seq data from the Putnam Lab Express-Compare repo.

Species

  • Montipora capitata
  • Pocillopora acuta

Reference Genomes

  • Montipora capitata
  • Pocillopora damicornis, used for P. acuta

RNA-seq Data hosted on NCBI

image

General Workflow

image

Progress

  • File download fixed with SRA Toolkit configuration (run in Mac Terminal)
  • FastQC run
  • Run through HISAT for alignment
Tags: workflow
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Zach Bengtsson  •  2025

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