Identifying long non-coding RNA in RNA-seq data from the Putnam Lab Express-Compare repo.
Species
- Montipora capitata
- Pocillopora acuta
Reference Genomes
- Montipora capitata
- Pocillopora damicornis, used for P. acuta
RNA-seq Data hosted on NCBI
General Workflow
Progress
- File download fixed with SRA Toolkit configuration (run in Mac Terminal)
- FastQC run
- Run through HISAT for alignment