Goals for Week 02 of Winter 2024…
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01 - Differential Expression - CEABiGR lncRNA
Differential expression runs with DESeq2. Link to code.
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00 - Size Distribution - CEABiGR lncRNA
Size distribution figures of CEAGBiGR lncRNAs. Link to code.
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00 - Status - e5 3 Species lncRNA Comparative
Current status of e5 3 species lncRNA comparative work from SICB slides
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CEABiGR lncRNA - WGCNA-01
Running Ariana’s version which has much more stringent filtering steps before performing the WGCNA:
Removing genes that don’t show any expression (done in previous WGCNA)
Choosing how many 0s to allow per gene
Choosing expression level thresholds
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