Lab Notebook

TL;DR - My students ran a variety of experiments using hairy shore crabs (Hemigrapsus oregonensis) this quarter. Some stand-out stressors were anti-biofouling paint, high temp coupled with pathogen exposure, hypoxia, NSAIDs, and caffeine. A scaled up resazurin protocol was successful as a proxy for respirometry. Use of hemocytometers, physiological assay kits, and handheld glucometers showed promise as quick and less invasive methods for measuring stress response. [Read More]

Full code in E5 deep-dive-expression repo here [Read More]

Overview [Read More]

📊 lncRNA–mRNA Correlation Pipeline Summary [Read More]

A fully-commented walk-through of an R script that builds a publication-quality map of northwest Washington, ready for reuse or adaptation. [Read More]